Breeder Genomics Hub: cloudifying reproducible breeding pipelines

Zeavolution

Brandon Monier

2023-05-14

Outline

Background/motivation
Introduction to the Breeder Genomics Hub
Demo

“Simple” analyses can break quickly

Continuous improvement in plant breeding demands adoption and adaptation

How can we efficiently create and share bioinformatic pipelines and resources that can be used for breeding programs across the globe?

Introducing the Breeder Genomics Hub

Demo

Want to be a beta tester?

Email:
- Brandon Monier (bm646@cornell.edu)
- Terry M. Casstevens (tmc46@cornell.edu)

Additional information

rPHG
- https://maize-genetics.github.io/rPHG/
rTASSEL
- https://maize-genetics.github.io/rTASSEL/
TASSEL 6
- https://github.com/maize-genetics/tassel-6-source
BioKotlin:
- https://www.biokotlin.org/

Acknowledgements

Buckler Lab (Cornell)

Ana Berthel
Peter J. Bradbury
Terry M. Casstevens
Bethany F. Econopouly
Lynn C. Johnson
Zack R. Miller
M. Cinta Romay
Matt Wiese

Robbins Lab (Cornell)

Francisco J. Agosto-Pérez
Kelly R. Robbins

ICARDA

Khaled Al-Shamaa